BIOINFORMATICS AND EVOLUTIONARY BIOLOGY LINKS                                                                                                                                       

Compiled by M.Mar Albà
Evolutionary Genomics Group
ICREA, PRBB-Barcelona
last updated: 11 Dec 2006

Genomes

NCBI, Genbank, The National Centre for Biotechnology Information
Ensembl, European Bioinformatics Institute
TIGR, The Institute for Genomics Research
The Sanger Centre, Genome Campus, Hinxton
ExPASy, Swiss Institute of Bioinformatics
UCSC Genome Browser, University of California Santa Cruz
Virus Database, University College London
Stanford genomic resources (SGD,ATdb)
GOLD, Genomes On Line Database
     Sequence Analysis

Protein interactions /pathways

DIP (Database of Protein Interactions)
KEGG (Kyoto encyclopedia of genes and genomes)
GeneExpress
STRING
Gene Ontology
Babelomics


Journals


Science
Science Evo
Nature
Nature Journals
Nature Evo/Eco
Bioinformatics
PNAS
Journal of Molecular Evolution
Evolutionary Bioinformatics
PubMed
Genome Biology
BMC Bioinformatics
BMC Genomics
BMC Evol. Biol.
EMBO journal/Reports
Proteins
Genome Research
New Scientist
Journal of Molecular Biology
Nature Genetics
Journal of Virology
Nucleic Acids Research
Archives of Virology
Molecular Biology and Evolution
Gene
Plos Journals
Genetics
Trends in Genetics
Genomics
Systematic Biology
   
    Molecular Evolution 


DNA regulatory motifs

TRANSFAC
MATCH
JASPAR
PROMO
MEME
PEAKS



Protein Structure


PDB (Protein Data Bank)
CATH (UCL)
SCOP (MRC-LMB)


Utilities

Sequence Randomizer
Dotter
ClustalConvert
ORFfinder
READSEQ

PRBB, Barcelona.